See what our members have published
2022
Perez, Gloria & Broadbent, David & Zarea, Ahmed & Dolgikh, Benedikt & Bernard, Matthew & Withrow, Alicia & McGill, Amelia & Toomajian, Victoria & Thampy, Lukose & Harkema, Jack & Walker, Joel & Kirkland, Thomas & Bachmann, Michael & Schmidt, Jens & Kanada, Masamitsu
In Vitro and In Vivo Analysis of Extracellular Vesicle‐Mediated Metastasis Using a Bright, Red‐Shifted Bioluminescent Reporter Protein.
Advanced Genetics. 3. 2022. 10.1002/ggn2.202270011.
G. Scheler
Sketch of a novel approach to a neural model.
arXiv preprint arXiv:2209.06865, 2022
Wang, Zirui & Belecciu, Theodore & Eaves, Joelle & Reimers, Mark & Bachmann, Michael & Woldring, Daniel.
Phytochemical drug discovery for COVID-19 using high-resolution computational docking and machine learning assisted binder prediction
Journal of Biomolecular Structure and Dynamics. 41. 1-21. 2022. 10.1080/07391102.2022.2112976.
2019
Kanada, Masamitsu & Kim, Bryan & Hardy, Jonathan & Bachmann, Michael & Bernard, Matthew & Perez, Gloria & Zarea, Ahmed & Ge, T & Withrow, Alicia & Ibrahim, Sherif & Toomajian, Victoria & Gambhir, Shweta & Paulmurugan, Ramasamy & Contag, Christopher & Ronald, John
Microvesicle-Mediated Delivery of Minicircle DNA Results in Effective Gene-Directed Enzyme Prodrug Cancer Therapy.
Molecular Cancer Therapeutics. 18. molcanther.0299.2019. 2019. 10.1158/1535-7163.MCT-19-0299.
G Scheler, J Schumann
Localist plasticity identified by mutual information.
bioRxiv, 658153, 2019.
2018
G. Scheler
Neuromodulation influences synchronization and intrinsic read-out.
F1000Res. 2018; 7: 1277. doi: 10.12688/f1000research.15804.2
Vermesh, Ophir & Aalipour, Amin & Ge, T. & Saenz, Yamil & Guo, Yue & Alam, Israt & Park, Seung-min & Adelson, Charlie & Mitsutake, Yoshiaki & Vilches-Moure, Jose & Godoy, Elias & Bachmann, Michael & Ooi, Chin & Lyons, Jennifer & Mueller, Kerstin & Arami, Hamed & Green, Alfredo & Solomon, Edward & Wang, Shan & Gambhir, Shweta
An intravascular magnetic wire for the high-throughput retrieval of circulating tumour cells in vivo.
Nature Biomedical Engineering. 2. 2018. 10.1038/s41551-018-0257-3.
2017
Wolfgang Ertel
Introduction to Artificial Intelligence, Second Edition
Undergraduate Topics in Computer Science, Springer 2017, ISBN 978-3-319-58486-7, pp. 1-338
G. Scheler
Logarithmic distributions prove that intrinsic learning is Hebbian.
F1000Res. 2017; 6: 1222. Published online 2017 Oct 11. doi: 10.12688/f1000research.12130.2
Amanatullah, Derek & Tamaresis, John & Chu, Pauline & Bachmann, Michael & Hoang, Nhat & Collyar, Deborah & Mayer, Aaron & West, Robert & Maloney, William & Contag, Christopher & King, Bonnie
Local estrogen axis in the human bone microenvironment regulates estrogen receptor-positive breast cancer cells.
Breast Cancer Research. 19. 121. 10.1186/s13058-017-0910-x. 2017
2016
Kanada, Masamitsu & Bachmann, Michael & Contag, Christopher
Signaling by Extracellular Vesicles Advances Cancer Hallmarks
Trends in Cancer. 2. 10.1016/j.trecan.2015.12.005. 2016.
Kirsch L, Chechik G.
On Expression Patterns and Developmental Origin of Human Brain Regions.
PLoS Comput Biol. 2016 Aug 26;12(8):e1005064. doi: 10.1371/journal.pcbi.1005064
Kühn R.
Disentangling giant component and finite cluster contributions in sparse random matrix spectra.
Phys Rev E. 2016 Apr;93:042110. doi: 10.1103/PhysRevE.93.042110.
Nitzan M, Katzav E, Kühn R, Biham O.
Distance distribution in configuration-model networks.
Phys Rev E. 2016 Jun;93(6):062309. doi: 10.1103/PhysRevE.93.062309
G Scheler
Extreme pattern compression in lognormal networks.
F1000Research 6, 2016
2015
Coman C, Solari FA, Hentschel A, Sickmann A, Zahedi RP, Ahrends R.
Simultaneous Metabolite, Protein, Lipid Extraction (SIMPLEX): A Combinatorial
Multimolecular Omics Approach for Systems Biology.
Mol Cell Proteomics. 2016 Apr;15(4):1453-66. doi: 10.1074/mcp.
Kanada M, Bachmann MH, Hardy JW, Frimannson DO, Bronsart L, Wang A, Sylvester MD, Schmidt TL, Kaspar RL, Butte MJ, Matin AC, Contag CH.
Differential fates of biomolecules delivered to target cells via extracellular vesicles.
Proc Natl Acad Sci U S A. 2015 Mar 24;112(12):E1433-42. doi: 10.1073/pnas.1418401112
Fuchs G, Petrov AN, Marceau CD, Popov LM, Chen J, O’Leary SE, Wang R, Carette JE, Sarnow P, Puglisi JD.
Kinetic pathway of 40S ribosomal subunit recruitment to hepatitis C virus internal ribosome entry site.
Proc Natl Acad Sci U S A. 2015 Jan 13;112(2):319-25. doi: 10.1073/pnas.1421328111
Templeton, Zachary & Bachmann, Michael & Alluri, Rajiv & Maloney, William & Contag, Christopher & King, Bonnie
Methods for Culturing Human Femur Tissue Explants to Study Breast Cancer Cell Colonization of the Metastatic Niche.
Journal of Visualized Experiments. 10.3791/52656. 2015.
2014
Ahrends R, Ota A, Kovary KM, Kudo T, Park BO, Teruel MN.,br>
Controlling low rates of cell differentiation through noise and ultrahigh feedback.
Science. 2014 Jun 20;344(6190):1384-9. doi: 10.1126/science.1252079.
Mohr J, Park JH, Obermayer K.
A computer vision system for rapid search inspired by surface-based attention mechanisms from human perception.
Neural Netw. 2014 Dec;60:182-93. doi: 10.1016/j.neunet.2014.08.010.
Ladenbauer J, Augustin M, Obermayer K.
How adaptation currents change threshold, gain, and variability of neuronal spiking.
J Neurophysiol. 2014 Mar;111(5):939-53. doi: 10.1152/jn.00586
2013
Bar-shira O, Chechik G.
Predicting protein-protein interactions in the post synaptic density.
Mol Cell Neurosci. 2013 Sep;56:128-39. doi: 10.1016/j.mcn.2013.04.004
Scheler G.,
Self-organization of signal transduction.
F1000Res. 2013 Apr 23;2:116. doi: 10.12688/f1000research.2-116.v1
Scheler G.
Learning intrinsic excitability in medium spiny neurons
F1000Res. 2013 Mar 14 [revised 2014 Feb 26];2:88. doi: 10.12688/f1000research.2-88.v2
2011
Abell E, Ahrends R, Bandara S, Park BO, Teruel MN.
Parallel adaptive feedback enhances reliability of the Ca2+ signaling system.
Proc Natl Acad Sci U S A. 2011 Aug 30;108(35):14485-90. doi: 10.1073/pnas.1018266108. Epub 2011 Aug 15.
Fuchs G, Diges C, Kohlstaedt LA, Wehner KA, Sarnow P.
Proteomic analysis of ribosomes: translational control of mRNA populations by glycogen synthase GYS1.
J Mol Biol. 2011 Jul 1;410(1):118-30. doi: 10.1016/j.jmb.2011.04.064
2010
Patel MR, Chang YF, Chen IY, Bachmann MH, Yan X, Contag CH, Gambhir SS.
Longitudinal, noninvasive imaging of T-cell effector function and proliferation in living subjects
Cancer Res. 2010 Dec 15;70(24):10141-9. doi: 10.1158/0008-5472
-2009
Moore H, Li NK.
A mathematical model for chronic myelogenous leukemia (CML) and T cell interaction.
J Theor Biol. 2004 Apr 21;227(4):513-23.
